PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030817-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 364aa    MW: 40291.5 Da    PI: 9.8263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030817-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.82.8e-0699126229
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPk 29 
                         +  hn+rEr RR++iN+  + L   + +
  WALNUT_00030817-RA  99 KLDHNARERDRRKKINTLAQSLSLSITE 126
                         678**************99988766655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-498137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF546312.4E-32213360No hitNo description
PROSITE profilePS5137110.675226285IPR000644CBS domain
CDDcd046232.49E-51228344No hitNo description
SMARTSM001160.0025229279IPR000644CBS domain
Gene3DG3DSA:3.10.580.102.8E-30232347No hitNo description
PfamPF005714.7E-7233278IPR000644CBS domain
PfamPF005717.5E-13290346IPR000644CBS domain
PROSITE profilePS5137114.18294352IPR000644CBS domain
SMARTSM001165.0E-11299346IPR000644CBS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0045454Biological Processcell redox homeostasis
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
GO:0050897Molecular Functioncobalt ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRPSNKVDWV ISNNLAIMFA SPPPTPFSIM AEPLDHQDPK SHDCKSYMIN SDINITAFES  60
LVHCPHPSGS TKVGVKLNCS TPSTLMSSEL ISTITTVKKL DHNARERDRR KKINTLAQSL  120
SLSITELAAT ALLESGTPLF RLLSPYPIRI HLYKRNQGKM QGALHSFLSR GSIIKNAVIQ  180
HFRLANPLIQ PVIFSRSHSV TSARIEEHGF ESTTIADVLK AKGKSADGSW LWCTMDDTVY  240
DAVQSMTQHN VGALVVVKPG EQKSIAGIIT ERDYLRKIIV QGRSSKSTKV GDIMTEENKL  300
ITVTPDTKVL RAMQLMTDNR IRHIPVIEGN GMVGMVSIGD VVRAVVSEHR EELNRLNAFI  360
QGGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fry_A5e-342093623150Putative signal-transduction protein with CBS
4fry_B5e-342093623150Putative signal-transduction protein with CBS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464969.11e-129PREDICTED: CBS domain-containing protein CBSX3, mitochondrial
SwissprotQ9LEV31e-122CBSX3_ARATH; CBS domain-containing protein CBSX3, mitochondrial
TrEMBLA0A067DW691e-129A0A067DW69_CITSI; Uncharacterized protein
STRINGVIT_06s0004g08460.t011e-123(Vitis vinifera)